DESCRIPTION

Package: Biostrings
Title: Efficient manipulation of biological strings
Description: Memory efficient string containers, string matching
	algorithms, and other utilities, for fast manipulation of large
	biological sequences or sets of sequences.
biocViews: SequenceMatching, Alignment, Sequencing, Genetics,
	DataImport, DataRepresentation, Infrastructure
URL: https://bioconductor.org/packages/Biostrings
BugReports: https://github.com/Bioconductor/Biostrings/issues
Version: 2.77.0
License: Artistic-2.0
Encoding: UTF-8
Authors@R: c(
	person("Hervé", "Pagès", role=c("aut", "cre"),
		email="hpages.on.github@gmail.com"),
	person("Patrick", "Aboyoun", role="aut"),
	person("Robert", "Gentleman", role="aut"),
	person("Saikat", "DebRoy", role="aut"),
	person("Vince", "Carey", role="ctb"),
	person("Nicolas", "Delhomme", role="ctb"),
	person("Felix", "Ernst", role="ctb"),
	person("Wolfgang", "Huber", role="ctb",
	       comment="'matchprobes' vignette"),
	person("Beryl", "Kanali", role="ctb",
	       comment="Converted 'MultipleAlignments' vignette from Sweave to RMarkdown"),
	person("Haleema", "Khan", role="ctb",
	       comment="Converted 'matchprobes' vignette from Sweave to RMarkdown"),
	person("Aidan", "Lakshman", role="ctb"),
	person("Kieran", "O'Neill", role="ctb"),
	person("Valerie", "Obenchain", role="ctb"),
	person("Marcel", "Ramos", role="ctb"),
	person("Albert", "Vill", role="ctb"),
	person("Jen", "Wokaty", role="ctb",
	       comment="Converted 'matchprobes' vignette from Sweave to RMarkdown"),
	person("Erik", "Wright", role="ctb"))
Depends: R (>= 4.0.0), BiocGenerics (>= 0.37.0), S4Vectors (>= 0.27.12),
	IRanges (>= 2.31.2), XVector (>= 0.37.1), GenomeInfoDb
Imports: methods, utils, grDevices, stats, crayon
LinkingTo: S4Vectors, IRanges, XVector
Suggests: graphics, pwalign, BSgenome (>= 1.13.14),
	BSgenome.Celegans.UCSC.ce2 (>= 1.3.11),
	BSgenome.Dmelanogaster.UCSC.dm3 (>= 1.3.11),
	BSgenome.Hsapiens.UCSC.hg18,
	drosophila2probe, hgu95av2probe, hgu133aprobe,
	GenomicFeatures (>= 1.3.14),
	hgu95av2cdf, affy (>= 1.41.3), affydata (>= 1.11.5),
	RUnit, BiocStyle, knitr, testthat (>= 3.0.0), covr
VignetteBuilder: knitr
Collate: utils.R
	IUPAC_CODE_MAP.R
	AMINO_ACID_CODE.R
	GENETIC_CODE.R
	XStringCodec-class.R
	seqtype.R
	coloring.R
	XString-class.R
	XStringSet-class.R
	XStringSet-comparison.R
	XStringViews-class.R
	MaskedXString-class.R
	XStringSetList-class.R
	seqinfo-methods.R
	xscat.R
	XStringSet-io.R
	letter.R
	getSeq.R
	letterFrequency.R
	dinucleotideFrequencyTest.R
	chartr.R
	reverseComplement.R
	translate.R
	toComplex.R
	replaceAt.R
	replaceLetterAt.R
	injectHardMask.R
	padAndClip.R
	strsplit-methods.R
	misc.R
	SparseList-class.R
	MIndex-class.R
	lowlevel-matching.R
	match-utils.R
	matchPattern.R
	maskMotif.R
	matchLRPatterns.R
	trimLRPatterns.R
	matchProbePair.R
	matchPWM.R
	findPalindromes.R
	PDict-class.R
	matchPDict.R
	XStringPartialMatches-class.R
	XStringQuality-class.R
	QualityScaledXStringSet.R
	pmatchPattern.R
	needwunsQS.R
	MultipleAlignment.R
	matchprobes.R
	moved_to_pwalign.R
	zzz.R