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Add a 2 hours walltime limit for prefetch tasks
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rnaseq_pipeline/sources/sra.py

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Original file line numberDiff line numberDiff line change
@@ -62,7 +62,8 @@ def run(self):
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self.output().path,
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max_size=65,
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scheduler_partition='Wormhole',
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metadata=self.metadata)
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metadata=self.metadata,
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walltime=timedelta(hours=2))
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def output(self):
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return luigi.LocalTarget(join(self._get_ncbi_public_dir(), 'sra', f'{self.srr}.sra'))

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